From sequencer to signed report.One platform.
inferagen handles every step of the clinical genomics workflow: ingest from any sequencer, run validated pipelines, classify variants with India-population data, generate human-readable reports, and route to your LIS.
TAT
3–4 hrs
Concordance
99.7%
Sequencers
3 supported
run / wes-ng-12042 · NA12878 benchmark
Ingest
BCL — NextSeq 1000
00:42
Pipelines
GATK4 · Parabricks
01:58
Interpret
ACMG + India-pop overlay
01:14
- 04
Sign-off
Pathologist review
--:--
- 05
Report & route
FHIR → LIS
--:--
Workflow
The complete clinical genomics workflow.
Five stages, one wallet, one report engine. Each stage is deterministic, audited, and version-pinned.
Stage 1
Ingest
BCL or FASTQ from Illumina, MGI, ONT. Direct sequencer integration or upload.
Stage 2
Pipelines
WES live in production (3–4 hour TAT). Same scalable architecture supports WGS, RNA-seq, targeted panels, PGx. NVIDIA Parabricks accelerated.
Stage 3
Interpret
ACMG classification with Indian-population overlay. AI co-pilot drafts variant interpretations for review.
Stage 4
Sign-off
Pathologist review, audit log, version-controlled QMS.
Stage 5
Report & route
White-labelled PDF + FHIR export. Push to your LIS / EMR / ABDM.
Modules
Six modules. One subscription wallet.
Mix and match per lab. Spin up one, or run all six in production from day one.
Module · 01
Pipelines
WES pipeline live in production — 3–4 hour TAT, multi-sample parallel processing. Same scalable architecture supports WGS, RNA-seq, transcriptome, and PGx workflows. Built on Nextflow + WDL.
Module · 02
Smart reports
Vector-illustrated, ACMG-classified reports with separate clinician and patient sections.
Module · 03
Integrations
Direct sequencer ingest (Illumina, MGI, ONT). LIS / EMR / ABDM-FHIR outbound.
Module · 04
Indian data engine
Indian-population allele frequencies overlaid on ClinVar + gnomAD for every variant call.
Module · 05
White-label
Per-lab subdomain, branding, and report templates. Your lab is the brand patients see — not us.
Module · 06
Security
DPDP Act 2023, ABDM-FHIR ready, ISO 27001 / 9001 / 20000 certified (parent: Orbitnexa Technologies). India data residency by default.
Stack
Built on the stack that scales.
We don't reinvent the bioinformatics stack — we productionise it. Every component below is battle-tested across the industry; what we add is the integration layer and the Indian-population overlay.
Trusted technology partners
- AWS Mumbai
- NVIDIA Parabricks
- GATK4
- DeepVariant
- Nextflow
- ClinVar
- Anthropic Claude
Infrastructure
- AWS Mumbai (India)
- NVIDIA Parabricks
- Kubernetes
- PostgreSQL
- S3 (India region)
Bioinformatics
- Nextflow + WDL
- GATK4, DeepVariant
- ClinVar, dbSNP, OMIM
- ANNOVAR, VEP
- ACMG 2015 + ClinGen
- Indian-population overlay (proprietary)
AI / ML
- Anthropic Claude
- OpenAI
- Custom variant interpretation models
Compliance
- DPDP Act 2023
- ABDM-FHIR
- ISO 27001 certified
- ISO 9001 certified
- ISO/IEC 20000 certified
- NABL workflow alignment
- Startup India · MSME
Benchmarks
Faster than your current pipeline. Verified.
Numbers measured against the gold-standard NA12878 benchmark on real Indian-lab Illumina output.
Verified · NA12878 + 5 design partners · May 2026
3–4 hrs
BCL → signed WES report (multi-sample parallel, Parabricks-accelerated)
99.7%
Concordance with gold-standard NA12878 benchmark
95%
Compression on raw FASTQ storage
Methodology
WES benchmark measured on Illumina NextSeq 1000 output, 100M paired-end reads, 30× coverage, processed on AWS Mumbai g5.12xlarge instances with multi-sample parallel execution. The same scalable architecture supports WGS, transcriptome, and PGx workflows at comparable throughput. Full benchmark report on request →
See it run on your own samples.
We'll set up a 30-day pilot with your existing FASTQ files. No charge for the first 50 samples. You only pay if you decide to keep using us.
- Live in 4 weeks
- 50 free credits
- No credit card
- FASTQ upload only